Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
GitHub repository with 19 stars and 2 forks.
Language: Python
Topics: bioinformatics, haplotype, linked-reads, pipeline, sequencing, variant-calling
2026-06-04: 19 stars and 2 forks.
Data intensive science for everyone.
GitHub repository with 1,787 stars and 1,157 forks.
Trending score: 0.53; stars gained: +2; forks gained: +0.
Language: Python
Topics: bioinformatics, workflow, genomics, science, sequencing, ngs
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
GitHub repository with 1,015 stars and 129 forks.
Trending score: 0.49; stars gained: +2; forks gained: +0.
Language: Python
Topics: bioinformatics, omics, bulk-rna-seq, single-cell
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
GitHub repository with 32 stars and 10 forks.
Trending score: 0.48; stars gained: +2; forks gained: +1.
Language: Python
Topics: ai-agent, awesome, awesome-list, bioinformatics, biomedical, genomics
Drop-in scientific plotting skill for Claude Code, Codex, Cursor, and other coding agents.
GitHub repository with 126 stars and 1 forks.
Trending score: 0.35; stars gained: +1; forks gained: +0.
Language: Python
Topics: agent-tools, ai-agent, bioinformatics, cell-style, data-visualization, ggplot2
A unifying framework for biomedical research knowledge graphs
GitHub repository with 310 stars and 53 forks.
Trending score: 0.24; stars gained: +0; forks gained: +0.
Language: Python
Topics: bioinformatics, biomedical, knowledge-graph, neo4j, framework, ontology
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
GitHub repository with 226 stars and 50 forks.
Trending score: 0.24; stars gained: +0; forks gained: +0.
Language: Python
Topics: anaconda, assembly-strategies, bioinformatics, biology, biopython, cloning-strategies
The agent that grows with you
GitHub repository with 180,762 stars and 31,001 forks.
Trending score: 5.79; stars gained: +1,360; forks gained: +322.
Language: Python
Topics: ai, ai-agent, ai-agents, anthropic, chatgpt, claude
SkillOpt is a text-space optimizer that trains reusable natural-language skills for frozen LLM agents through trajectory-driven edits, validation-gated updates, and deployable best_skill.md artifacts.
GitHub repository with 4,884 stars and 485 forks.
Trending score: 4.55; stars gained: +340; forks gained: +27.
Language: Python
Topics: agent-skills, self-evolving-agents
754 structured cybersecurity skills for AI agents · Mapped to 5 frameworks: MITRE ATT&CK, NIST CSF 2.0, MITRE ATLAS, D3FEND & NIST AI RMF · agentskills.io standard · Works with Claude Code, GitHub Copilot, Codex CLI, Cursor, Gemini CLI & 20+ platforms · 26 security domains · Apache 2.0
GitHub repository with 13,233 stars and 1,551 forks.
Trending score: 4.53; stars gained: +301; forks gained: +38.
Language: Python
Topics: ai-agents, claude-code, cybersecurity, incident-response, mitre-attack, penetration-testing
Turn any technical book PDF into a Claude Code skill — ready to study, reference, and use while you work.
GitHub repository with 4,166 stars and 523 forks.
Trending score: 4.43; stars gained: +415; forks gained: +37.
Language: Python
Claude Code is an agentic coding tool that lives in your terminal, understands your codebase, and helps you code faster by executing routine tasks, explaining complex code, and handling git workflows - all through natural language commands.
GitHub repository with 130,131 stars and 21,146 forks.
Trending score: 4.42; stars gained: +277; forks gained: +38.
Language: Python
Stealth Chromium that passes every bot detection test. Drop-in Playwright replacement with source-level fingerprint patches. 30/30 tests passed.
GitHub repository with 23,119 stars and 1,836 forks.
Trending score: 4.24; stars gained: +250; forks gained: +17.
Language: Python
Topics: anti-detect, bot-detection, browser-automation, chromium, cloudflare, fingerprint
A curated list of awesome AI tools, libraries, papers, datasets, and frameworks that accelerate scientific discovery — from physics and chemistry to biology, materials, and beyond.
GitHub repository with 1,621 stars and 179 forks.
Trending score: 0.81; stars gained: +4; forks gained: +0.
Topics: ai-for-science, ai4s, ai4science, awesome, awesome-list, bioinformatics
Data intensive science for everyone.
GitHub repository with 1,787 stars and 1,157 forks.
Trending score: 0.53; stars gained: +2; forks gained: +0.
Language: Python
Topics: bioinformatics, workflow, genomics, science, sequencing, ngs
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
GitHub repository with 1,015 stars and 129 forks.
Trending score: 0.49; stars gained: +2; forks gained: +0.
Language: Python
Topics: bioinformatics, omics, bulk-rna-seq, single-cell
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
GitHub repository with 32 stars and 10 forks.
Trending score: 0.48; stars gained: +2; forks gained: +1.
Language: Python
Topics: ai-agent, awesome, awesome-list, bioinformatics, biomedical, genomics
Drop-in scientific plotting skill for Claude Code, Codex, Cursor, and other coding agents.
GitHub repository with 126 stars and 1 forks.
Trending score: 0.35; stars gained: +1; forks gained: +0.
Language: Python
Topics: agent-tools, ai-agent, bioinformatics, cell-style, data-visualization, ggplot2
Source code for JBrowse 2, a modern React-based genome browser
GitHub repository with 285 stars and 84 forks.
Trending score: 0.33; stars gained: +0; forks gained: +0.
Language: TypeScript
Topics: jbrowse, genomics, bioinformatics, visualization