pydna-group/pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

GitHub repository with 226 stars and 51 forks.

Language: Python

Topics: bioinformatics, biopython, python, anaconda, dna, gel, jupyter-notebooks, biology, pydna, jupyter-notebook

Open provider repository

Latest metric snapshot

2026-06-10: 226 stars and 51 forks.

Similar repositories

  1. 1. K-Dense-AI/scientific-agent-skills

    Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

    GitHub repository with 28,256 stars and 2,903 forks.

    Trending score: 4.20; stars gained: +124; forks gained: +11.

    Language: Python

    Topics: agent-skills, ai-scientist, bioinformatics, chemoinformatics, claude, claude-skills

  2. 2. BioTender-max/awesome-bio-agent-skills

    A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.

    GitHub repository with 58 stars and 15 forks.

    Trending score: 1.47; stars gained: +2; forks gained: +1.

    Language: Python

    Topics: agent-skills, ai-agent, ai-agents, awesome, awesome-list, bioinformatics

  3. 3. ClawBio/ClawBio

    🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.

    GitHub repository with 972 stars and 197 forks.

    Trending score: 1.09; stars gained: +0; forks gained: +0.

    Language: Python

    Topics: ai-agents, bioinformatics, equity, genomics, local-first, openclaw

  4. 4. omicverse/omicverse

    A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

    GitHub repository with 1,031 stars and 134 forks.

    Trending score: 0.82; stars gained: +0; forks gained: +0.

    Language: Python

    Topics: bioinformatics, omics, bulk-rna-seq, single-cell

  5. 5. haddocking/haddock3

    Official repo of the modular BioExcel version of HADDOCK

    GitHub repository with 249 stars and 60 forks.

    Trending score: 0.64; stars gained: +1; forks gained: +0.

    Language: Python

    Topics: bioinformatics, complexes, docking, integrative-modeling, modelling, proteins

  6. 6. scverse/anndata

    Annotated data.

    GitHub repository with 752 stars and 200 forks.

    Trending score: 0.57; stars gained: +0; forks gained: +3.

    Language: Python

    Topics: anndata, bioinformatics, data-science, machine-learning, scanpy, scverse

Trending in Python

  1. 1. harry0703/MoneyPrinterTurbo

    利用AI大模型,一键生成高清短视频 Generate short videos with one click using AI LLM.

    GitHub repository with 88,031 stars and 12,625 forks.

    Trending score: 6.02; stars gained: +1,097; forks gained: +218.

    Language: Python

    Topics: ai, automation, chatgpt, moviepy, python, shortvideo

  2. 2. pewdiepie-archdaemon/odysseus

    Self-hosted AI workspace.

    GitHub repository with 71,448 stars and 9,111 forks.

    Trending score: 5.98; stars gained: +834; forks gained: +140.

    Language: Python

  3. 3. NousResearch/hermes-agent

    The agent that grows with you

    GitHub repository with 194,111 stars and 33,990 forks.

    Trending score: 5.92; stars gained: +753; forks gained: +209.

    Language: Python

    Topics: ai, ai-agent, ai-agents, anthropic, chatgpt, claude

  4. 4. NVIDIA/SkillSpector

    Security scanner for AI agent skills. Detect vulnerabilities, malicious patterns, and security risks.

    GitHub repository with 5,962 stars and 441 forks.

    Trending score: 5.61; stars gained: +874; forks gained: +76.

    Language: Python

  5. 5. rohitg00/ai-engineering-from-scratch

    Learn it. Build it. Ship it for others.

    GitHub repository with 32,676 stars and 5,366 forks.

    Trending score: 5.59; stars gained: +762; forks gained: +135.

    Language: Python

    Topics: agents, ai, ai-agents, ai-engineering, computer-vision, course

  6. 6. Agents365-ai/drawio-skill

    Generate draw.io diagrams from natural language — 6 presets, vision self-check + up to 5-round refinement, codebase-to-diagram, 10,000+ official shapes & 321 AI/LLM brand logos. Exports PNG/SVG/PDF/JPG.

    GitHub repository with 3,445 stars and 240 forks.

    Trending score: 5.51; stars gained: +1,369; forks gained: +113.

    Language: Python

    Topics: agent-skill, agent-skills, architecture-diagram, claude-code, claude-code-skill, claude-skills

Trending topic: bioinformatics

  1. 1. K-Dense-AI/scientific-agent-skills

    Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

    GitHub repository with 28,256 stars and 2,903 forks.

    Trending score: 4.20; stars gained: +124; forks gained: +11.

    Language: Python

    Topics: agent-skills, ai-scientist, bioinformatics, chemoinformatics, claude, claude-skills

  2. 2. Developer-Y/cs-video-courses

    List of Computer Science courses with video lectures.

    GitHub repository with 81,801 stars and 11,301 forks.

    Trending score: 2.37; stars gained: +15; forks gained: -1.

    Topics: algorithms, bioinformatics, computational-biology, computational-physics, computer-architecture, computer-science

  3. 3. ai-boost/awesome-ai-for-science

    A curated list of awesome AI tools, libraries, papers, datasets, and frameworks that accelerate scientific discovery — from physics and chemistry to biology, materials, and beyond.

    GitHub repository with 1,648 stars and 185 forks.

    Trending score: 1.75; stars gained: +5; forks gained: +2.

    Topics: ai-for-science, ai4s, ai4science, awesome, awesome-list, bioinformatics

  4. 4. BioTender-max/awesome-bio-agent-skills

    A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.

    GitHub repository with 58 stars and 15 forks.

    Trending score: 1.47; stars gained: +2; forks gained: +1.

    Language: Python

    Topics: agent-skills, ai-agent, ai-agents, awesome, awesome-list, bioinformatics

  5. 5. ClawBio/ClawBio

    🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.

    GitHub repository with 972 stars and 197 forks.

    Trending score: 1.09; stars gained: +0; forks gained: +0.

    Language: Python

    Topics: ai-agents, bioinformatics, equity, genomics, local-first, openclaw

  6. 6. genomoncology/biomcp

    BioMCP: Biomedical Model Context Protocol

    GitHub repository with 526 stars and 107 forks.

    Trending score: 1.02; stars gained: +2; forks gained: +1.

    Language: Rust

    Topics: ai, bioinformatics, clinical-trials, genomics, llm, mcp