genomeinformatics/xengsort
a fast xenograft read sorter based on space-efficient k-mer hashing, efficiently paralellized, written in jit-compiled Python using numba. Since 2.1.0, xengsort supports also WGBS data in addition to RNA-seq, whole genome and exome data.
GitLab repository with 9 stars and 2 forks.
Topics: Cuckoo hashing, RNA-Seq, WGBS, Whole-Genome-Sequencing, cancer, exome, numba, python, xenograft sorting