Python API and Jupyter widget for Vitessce
GitHub repository with 67 stars and 12 forks.
Language: Python
Topics: single-cell, kharchenkolab, data-visualization, vitessce, ipywidget, jupyter-widget, jupyterlab-extension, hidivelab
2026-06-05: 67 stars and 12 forks.
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
GitHub repository with 1,015 stars and 129 forks.
Trending score: 0.77; stars gained: +3; forks gained: +0.
Language: Python
Topics: bioinformatics, omics, bulk-rna-seq, single-cell
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
GitHub repository with 33 stars and 10 forks.
Trending score: 0.59; stars gained: +3; forks gained: +0.
Language: Python
Topics: ai-agent, awesome, awesome-list, bioinformatics, biomedical, genomics
The simplest repo for scGPT inference, finetuning and training.
GitHub repository with 9 stars and 3 forks.
Trending score: 0.49; stars gained: +2; forks gained: +0.
Language: Python
Topics: ai-bio, aixbio, cell-biology, computational-biology, scrna-seq-analysis, single-cell
Convert between AnnData and SingleCellExperiment
GitHub repository with 151 stars and 19 forks.
Trending score: 0.04; stars gained: +0; forks gained: +0.
Language: Python
Topics: bioconductor, jupyter, rpy2, scanpy, single-cell
Python package to perform enrichment analysis from omics data.
GitHub repository with 268 stars and 36 forks.
Trending score: 0.04; stars gained: +0; forks gained: +0.
Language: Python
Topics: python, data-science, bioinformatics, transcriptomics, numba, single-cell
The agent that grows with you
GitHub repository with 181,322 stars and 31,112 forks.
Trending score: 5.95; stars gained: +1,867; forks gained: +361.
Language: Python
Topics: ai, ai-agent, ai-agents, anthropic, chatgpt, claude
Compress tool outputs, logs, files, and RAG chunks before they reach the LLM. 60-95% fewer tokens, same answers. Library, proxy, MCP server.
GitHub repository with 12,942 stars and 833 forks.
Trending score: 5.69; stars gained: +2,829; forks gained: +175.
Language: Python
Topics: agent, ai, anthropic, claude-code, compression, context-engineering
Academic Research Skills for Claude Code: research → write → review → revise → finalize
GitHub repository with 27,327 stars and 2,249 forks.
Trending score: 5.52; stars gained: +1,079; forks gained: +89.
Language: Python
Topics: academic-pipeline, academic-writing, ai-research, claude, claude-code, literature-review
GitHub repository with 29,986 stars and 4,219 forks.
Trending score: 4.88; stars gained: +688; forks gained: +114.
Language: Python
Turn any technical book PDF into a Claude Code skill — ready to study, reference, and use while you work.
GitHub repository with 4,221 stars and 528 forks.
Trending score: 4.88; stars gained: +476; forks gained: +68.
Language: Python
An opinionated list of Python frameworks, libraries, tools, and resources
GitHub repository with 301,315 stars and 28,045 forks.
Trending score: 4.60; stars gained: +518; forks gained: +24.
Language: Python
Topics: awesome, python, collections, python-frameworks, python-libraries, python-tools
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
GitHub repository with 1,015 stars and 129 forks.
Trending score: 0.77; stars gained: +3; forks gained: +0.
Language: Python
Topics: bioinformatics, omics, bulk-rna-seq, single-cell
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
GitHub repository with 33 stars and 10 forks.
Trending score: 0.59; stars gained: +3; forks gained: +0.
Language: Python
Topics: ai-agent, awesome, awesome-list, bioinformatics, biomedical, genomics
The simplest repo for scGPT inference, finetuning and training.
GitHub repository with 9 stars and 3 forks.
Trending score: 0.49; stars gained: +2; forks gained: +0.
Language: Python
Topics: ai-bio, aixbio, cell-biology, computational-biology, scrna-seq-analysis, single-cell
A collection of tools to process single-cell omics datasets.
GitHub repository with 52 stars and 10 forks.
Trending score: 0.05; stars gained: +0; forks gained: +0.
Language: C
Topics: single-cell, scrna-seq, scatac-seq
Convert between AnnData and SingleCellExperiment
GitHub repository with 151 stars and 19 forks.
Trending score: 0.04; stars gained: +0; forks gained: +0.
Language: Python
Topics: bioconductor, jupyter, rpy2, scanpy, single-cell
Python package to perform enrichment analysis from omics data.
GitHub repository with 268 stars and 36 forks.
Trending score: 0.04; stars gained: +0; forks gained: +0.
Language: Python
Topics: python, data-science, bioinformatics, transcriptomics, numba, single-cell