snakemake/snakedeploy

deploy a snakemake pipeline directly from version control (under development)

GitHub repository with 25 stars and 13 forks.

Language: Python

Topics: reproducibility, snakemake

Open provider repository

Latest metric snapshot

2026-06-05: 25 stars and 13 forks.

Similar repositories

  1. 1. ClawBio/ClawBio

    🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.

    GitHub repository with 922 stars and 190 forks.

    Trending score: 1.10; stars gained: +10; forks gained: +2.

    Language: Python

    Topics: ai-agents, bioinformatics, equity, genomics, local-first, openclaw

  2. 2. xodnr927-byte/repro-evidence-kit

    Reproducible artifact manifests, sandbox-output verification, and evidence-bundle validation for artifact-heavy workflows.

    GitHub repository with 6 stars and 0 forks.

    Trending score: 0.07; stars gained: +0; forks gained: +0.

    Language: Python

    Topics: artifact-verification, audit, binary-analysis, ci, cli, evidence

  3. 3. snakemake/snakemake

    This is the development home of the workflow management system Snakemake. For general information, see

    GitHub repository with 2,796 stars and 648 forks.

    Trending score: 0.04; stars gained: +0; forks gained: +0.

    Language: Python

    Topics: snakemake, reproducibility, workflow-management

  4. 4. UKPLab/scicoqa

    Official Code for "SciCoQA: Quality Assurance for Scientific Paper--Code Alignment" https://arxiv.org/abs/2601.12910

    GitHub repository with 5 stars and 0 forks.

    Trending score: 0.03; stars gained: +0; forks gained: +0.

    Language: Python

    Topics: agentic-ai, ai-scientist, ai4science, llm, nlp, reproducibility

  5. 5. anaconda/anaconda-project

    Tool for encapsulating, running, and reproducing data science projects

    GitHub repository with 240 stars and 97 forks.

    Trending score: 0.05.

    Language: Python

    Topics: data, anaconda, conda-environment, reproducibility, datascience, running

Trending in Python

  1. 1. NousResearch/hermes-agent

    The agent that grows with you

    GitHub repository with 181,795 stars and 31,192 forks.

    Trending score: 5.95; stars gained: +1,867; forks gained: +361.

    Language: Python

    Topics: ai, ai-agent, ai-agents, anthropic, chatgpt, claude

  2. 2. chopratejas/headroom

    Compress tool outputs, logs, files, and RAG chunks before they reach the LLM. 60-95% fewer tokens, same answers. Library, proxy, MCP server.

    GitHub repository with 13,361 stars and 853 forks.

    Trending score: 5.69; stars gained: +2,829; forks gained: +175.

    Language: Python

    Topics: agent, ai, anthropic, compression, context-engineering, context-window

  3. 3. Imbad0202/academic-research-skills

    Academic Research Skills for Claude Code: research → write → review → revise → finalize

    GitHub repository with 27,484 stars and 2,256 forks.

    Trending score: 5.52; stars gained: +1,079; forks gained: +89.

    Language: Python

    Topics: academic-pipeline, academic-writing, ai-research, claude, claude-code, literature-review

  4. 4. rohitg00/ai-engineering-from-scratch

    Learn it. Build it. Ship it for others.

    GitHub repository with 28,622 stars and 4,680 forks.

    Trending score: 5.32; stars gained: +1,261; forks gained: +238.

    Language: Python

    Topics: agents, ai, ai-agents, ai-engineering, computer-vision, course

  5. 5. anthropics/financial-services

    GitHub repository with 30,029 stars and 4,231 forks.

    Trending score: 4.88; stars gained: +688; forks gained: +114.

    Language: Python

  6. 6. vinta/awesome-python

    An opinionated list of Python frameworks, libraries, tools, and resources

    GitHub repository with 301,371 stars and 28,044 forks.

    Trending score: 4.60; stars gained: +518; forks gained: +24.

    Language: Python

    Topics: awesome, python, collections, python-frameworks, python-libraries, python-tools

Trending topic: reproducibility

  1. 1. ClawBio/ClawBio

    🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.

    GitHub repository with 922 stars and 190 forks.

    Trending score: 1.10; stars gained: +10; forks gained: +2.

    Language: Python

    Topics: ai-agents, bioinformatics, equity, genomics, local-first, openclaw

  2. 2. xodnr927-byte/repro-evidence-kit

    Reproducible artifact manifests, sandbox-output verification, and evidence-bundle validation for artifact-heavy workflows.

    GitHub repository with 6 stars and 0 forks.

    Trending score: 0.07; stars gained: +0; forks gained: +0.

    Language: Python

    Topics: artifact-verification, audit, binary-analysis, ci, cli, evidence

  3. 3. Brandlytic/Research-Paper-Writing-Skills

    Enhance research paper writing by organizing workflows, improving structure, and supporting self-review for clear, logical, and well-aligned content.

    GitHub repository with 6 stars and 0 forks.

    Trending score: 0.05; stars gained: +0; forks gained: +0.

    Topics: academic-writing, agent, agentic-ai, ai-agents, citation-verification, literature-review

  4. 4. snakemake/snakemake

    This is the development home of the workflow management system Snakemake. For general information, see

    GitHub repository with 2,796 stars and 648 forks.

    Trending score: 0.04; stars gained: +0; forks gained: +0.

    Language: Python

    Topics: snakemake, reproducibility, workflow-management

  5. 5. UKPLab/scicoqa

    Official Code for "SciCoQA: Quality Assurance for Scientific Paper--Code Alignment" https://arxiv.org/abs/2601.12910

    GitHub repository with 5 stars and 0 forks.

    Trending score: 0.03; stars gained: +0; forks gained: +0.

    Language: Python

    Topics: agentic-ai, ai-scientist, ai4science, llm, nlp, reproducibility

  6. 6. anaconda/anaconda-project

    Tool for encapsulating, running, and reproducing data science projects

    GitHub repository with 240 stars and 97 forks.

    Trending score: 0.05.

    Language: Python

    Topics: data, anaconda, conda-environment, reproducibility, datascience, running