Utility functions for large-scale bio-image analysis.
GitHub repository with 64 stars and 23 forks.
Language: Python
Topics: segmentation, 3d-segmentation, image-analysis, bio-image-analysis, multicut, lifted-multicut, mutex-watershed, affine-transformation, microscopy-images
2026-06-05: 64 stars and 23 forks.
GitHub repository with 8,510 stars and 2,408 forks.
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Language: Python
Topics: segmentation
Python library for analysis of neuroanatomical data.
GitHub repository with 115 stars and 36 forks.
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Language: Python
Topics: 3d, anatomy, blender, connectome, flywire, hemibrain
Chainer Implementation of Fully Convolutional Networks. (Training code to reproduce the original result is available.)
GitHub repository with 216 stars and 96 forks.
Trending score: 0.00; stars gained: +0; forks gained: +0.
Language: Python
Topics: computer-vision, chainer, deep-learning, segmentation, fcn, convolutional-networks
An Implementation of Fully Convolutional Networks in Tensorflow.
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Trending score: 0.00.
Language: Python
Topics: tensorflow, vgg, segmentation
The agent that grows with you
GitHub repository with 182,513 stars and 31,295 forks.
Trending score: 5.95; stars gained: +1,867; forks gained: +361.
Language: Python
Topics: ai, ai-agent, ai-agents, anthropic, chatgpt, claude
Compress tool outputs, logs, files, and RAG chunks before they reach the LLM. 60-95% fewer tokens, same answers. Library, proxy, MCP server.
GitHub repository with 14,053 stars and 885 forks.
Trending score: 5.69; stars gained: +2,829; forks gained: +175.
Language: Python
Topics: agent, ai, anthropic, compression, context-engineering, context-window
Academic Research Skills for Claude Code: research → write → review → revise → finalize
GitHub repository with 27,616 stars and 2,272 forks.
Trending score: 5.52; stars gained: +1,079; forks gained: +89.
Language: Python
Topics: academic-pipeline, academic-writing, ai-research, claude, claude-code, literature-review
Learn it. Build it. Ship it for others.
GitHub repository with 28,711 stars and 4,695 forks.
Trending score: 5.32; stars gained: +1,261; forks gained: +238.
Language: Python
Topics: agents, ai, ai-agents, ai-engineering, computer-vision, course
An opinionated list of Python frameworks, libraries, tools, and resources
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Language: Python
Topics: awesome, collections, python, python-frameworks, python-libraries, python-tools
Use claude-code for free in the terminal, VSCode extension or discord like OpenClaw (voice supported)
GitHub repository with 32,540 stars and 4,942 forks.
Trending score: 4.56; stars gained: +467; forks gained: +82.
Language: Python
GitHub repository with 8,510 stars and 2,408 forks.
Trending score: 1.13; stars gained: +14; forks gained: +4.
Language: Python
Topics: segmentation
Multi-platform, free open source software for visualization and image computing.
GitHub repository with 2,490 stars and 738 forks.
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Language: C++
Topics: 3d-printing, 3d-slicer, c-plus-plus, computed-tomography, image-guided-therapy, image-processing
An Android app to scan your documents — simple and respectful
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Open source Python library for building bioimage analysis pipelines
GitHub repository with 201 stars and 41 forks.
Trending score: 0.22; stars gained: +0; forks gained: +0.
Language: Jupyter Notebook
Topics: biomedical-image-processing, classification, computer-vision, convolutional-neural-networks, deep-learning, denoising
Python library for analysis of neuroanatomical data.
GitHub repository with 115 stars and 36 forks.
Trending score: 0.04; stars gained: +0; forks gained: +0.
Language: Python
Topics: 3d, anatomy, blender, connectome, flywire, hemibrain
Chainer Implementation of Fully Convolutional Networks. (Training code to reproduce the original result is available.)
GitHub repository with 216 stars and 96 forks.
Trending score: 0.00; stars gained: +0; forks gained: +0.
Language: Python
Topics: computer-vision, chainer, deep-learning, segmentation, fcn, convolutional-networks