brainglobe/cellfinder
Automated 3D cell detection in very large images
GitHub repository with 227 stars and 78 forks.
Language: Python
Topics: microscopy, cell-detection, deep-learning, image-analysis, neuroscience, python, neuroanatomy, imaging
Automated 3D cell detection in very large images
GitHub repository with 227 stars and 78 forks.
Language: Python
Topics: microscopy, cell-detection, deep-learning, image-analysis, neuroscience, python, neuroanatomy, imaging
Trending score 0.12, activity score 0.53, stars gained +0, forks gained +0.
2026-06-05: 227 stars and 78 forks.
Python package for image-based profiling bioinformatics
GitHub repository with 142 stars and 40 forks.
Trending score: 0.60; stars gained: +3; forks gained: +0.
Language: Python
Topics: cytominer, microscopy, morphological-profiling, python, cellprofiler, image-analysis
A Python interface to access neuroanatomical atlases
GitHub repository with 180 stars and 64 forks.
Trending score: 0.13; stars gained: +0; forks gained: +0.
Language: Python
Topics: neuroscience, python, microscopy, registration, visualisation, brain
Automated 3D cell detection in very large images
GitHub repository with 227 stars and 78 forks.
Trending score: 0.12; stars gained: +0; forks gained: +0.
Language: Python
Topics: microscopy, cell-detection, deep-learning, image-analysis, neuroscience, python
Read and write Neuroglancer datasets programmatically.
GitHub repository with 173 stars and 53 forks.
Trending score: 0.05; stars gained: +0; forks gained: +0.
Language: Python
Topics: neuroglancer, volumetric-data, python, cloud, numpy, connectomics
LLM-powered agents for scientific research automation
GitHub repository with 78 stars and 15 forks.
Trending score: 0.05; stars gained: +0; forks gained: +0.
Language: Python
Topics: agentic-ai, agentic-framework, agentic-workflow, density-functional-theory, experiments, materials
Loading and handling microscopy data in blender
GitHub repository with 152 stars and 11 forks.
Trending score: 0.02; stars gained: +0; forks gained: +0.
Language: Python
Topics: blender, blender-addon, microscopy, volume-rendering
The agent that grows with you
GitHub repository with 181,728 stars and 31,179 forks.
Trending score: 5.95; stars gained: +1,867; forks gained: +361.
Language: Python
Topics: ai, ai-agent, ai-agents, anthropic, chatgpt, claude
Compress tool outputs, logs, files, and RAG chunks before they reach the LLM. 60-95% fewer tokens, same answers. Library, proxy, MCP server.
GitHub repository with 13,361 stars and 853 forks.
Trending score: 5.69; stars gained: +2,829; forks gained: +175.
Language: Python
Topics: agent, ai, anthropic, compression, context-engineering, context-window
Academic Research Skills for Claude Code: research → write → review → revise → finalize
GitHub repository with 27,484 stars and 2,256 forks.
Trending score: 5.52; stars gained: +1,079; forks gained: +89.
Language: Python
Topics: academic-pipeline, academic-writing, ai-research, claude, claude-code, literature-review
GitHub repository with 30,029 stars and 4,231 forks.
Trending score: 4.88; stars gained: +688; forks gained: +114.
Language: Python
Turn any technical book PDF into a Claude Code skill — ready to study, reference, and use while you work.
GitHub repository with 4,250 stars and 534 forks.
Trending score: 4.88; stars gained: +476; forks gained: +68.
Language: Python
An opinionated list of Python frameworks, libraries, tools, and resources
GitHub repository with 301,371 stars and 28,044 forks.
Trending score: 4.60; stars gained: +518; forks gained: +24.
Language: Python
Topics: awesome, python, collections, python-frameworks, python-libraries, python-tools
Python package for image-based profiling bioinformatics
GitHub repository with 142 stars and 40 forks.
Trending score: 0.60; stars gained: +3; forks gained: +0.
Language: Python
Topics: cytominer, microscopy, morphological-profiling, python, cellprofiler, image-analysis
Visualize, share and annotate your large 3D images online
GitHub repository with 176 stars and 35 forks.
Trending score: 0.36; stars gained: +0; forks gained: +0.
Language: TypeScript
Topics: connectomics, em, reconstruction, microscopy, microscopy-images, neurobiology
A Python interface to access neuroanatomical atlases
GitHub repository with 180 stars and 64 forks.
Trending score: 0.13; stars gained: +0; forks gained: +0.
Language: Python
Topics: neuroscience, python, microscopy, registration, visualisation, brain
Automated 3D cell detection in very large images
GitHub repository with 227 stars and 78 forks.
Trending score: 0.12; stars gained: +0; forks gained: +0.
Language: Python
Topics: microscopy, cell-detection, deep-learning, image-analysis, neuroscience, python
Read and write Neuroglancer datasets programmatically.
GitHub repository with 173 stars and 53 forks.
Trending score: 0.05; stars gained: +0; forks gained: +0.
Language: Python
Topics: neuroglancer, volumetric-data, python, cloud, numpy, connectomics
LLM-powered agents for scientific research automation
GitHub repository with 78 stars and 15 forks.
Trending score: 0.05; stars gained: +0; forks gained: +0.
Language: Python
Topics: agentic-ai, agentic-framework, agentic-workflow, density-functional-theory, experiments, materials