amberbiology/scribl
Semantic Capture of Relationships In Biological Literature (scribl)
GitHub repository with 5 stars and 1 forks.
Language: Python
Topics: computational-biology, literature-mining, network-biology, systems-biology
Semantic Capture of Relationships In Biological Literature (scribl)
GitHub repository with 5 stars and 1 forks.
Language: Python
Topics: computational-biology, literature-mining, network-biology, systems-biology
2026-06-05: 5 stars and 1 forks.
The simplest repo for scGPT inference, finetuning and training.
GitHub repository with 9 stars and 3 forks.
Trending score: 0.49; stars gained: +2; forks gained: +0.
Language: Python
Topics: ai-bio, aixbio, cell-biology, computational-biology, scrna-seq-analysis, single-cell
A self-hosted platform for orchestrating bioinformatics pipelines, managing experimental metadata, and running reproducible compute workloads.
GitHub repository with 5 stars and 0 forks.
Trending score: 0.05; stars gained: +0; forks gained: +0.
Language: Python
Topics: bioinformatics, computational-biology, data-provenance, gcp, genomics, kubernetes
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Antigravity, and the open Agent Skills standard.
GitHub repository with 27,321 stars and 2,819 forks.
Trending score: 0.05.
Language: Python
Topics: ai-scientist, bioinformatics, chemoinformatics, claude, claude-skills, claudecode
Python library for reading, writing, and converting computational chemistry file formats and generating input files.
GitHub repository with 163 stars and 54 forks.
Trending score: 0.00.
Language: Python
Topics: quantum-chemistry, quantum-chemistry-programs, quantum-chemistry-packages, computational-chemistry, computational-biology, computational-physics
The agent that grows with you
GitHub repository with 181,649 stars and 31,166 forks.
Trending score: 5.95; stars gained: +1,867; forks gained: +361.
Language: Python
Topics: ai, ai-agent, ai-agents, anthropic, chatgpt, claude
Compress tool outputs, logs, files, and RAG chunks before they reach the LLM. 60-95% fewer tokens, same answers. Library, proxy, MCP server.
GitHub repository with 13,361 stars and 853 forks.
Trending score: 5.69; stars gained: +2,829; forks gained: +175.
Language: Python
Topics: agent, ai, anthropic, compression, context-engineering, context-window
Academic Research Skills for Claude Code: research → write → review → revise → finalize
GitHub repository with 27,422 stars and 2,253 forks.
Trending score: 5.52; stars gained: +1,079; forks gained: +89.
Language: Python
Topics: academic-pipeline, academic-writing, ai-research, claude, claude-code, literature-review
GitHub repository with 30,029 stars and 4,231 forks.
Trending score: 4.88; stars gained: +688; forks gained: +114.
Language: Python
Turn any technical book PDF into a Claude Code skill — ready to study, reference, and use while you work.
GitHub repository with 4,250 stars and 534 forks.
Trending score: 4.88; stars gained: +476; forks gained: +68.
Language: Python
An opinionated list of Python frameworks, libraries, tools, and resources
GitHub repository with 301,371 stars and 28,044 forks.
Trending score: 4.60; stars gained: +518; forks gained: +24.
Language: Python
Topics: awesome, python, collections, python-frameworks, python-libraries, python-tools
The simplest repo for scGPT inference, finetuning and training.
GitHub repository with 9 stars and 3 forks.
Trending score: 0.49; stars gained: +2; forks gained: +0.
Language: Python
Topics: ai-bio, aixbio, cell-biology, computational-biology, scrna-seq-analysis, single-cell
Precision genomics for everyone, everywhere. Powered by private AI.
GitHub repository with 179 stars and 76 forks.
Trending score: 0.24; stars gained: +0; forks gained: +0.
Language: Java
Topics: bioinformatics, dna-sequencing, regulatory-elements, genomics, artificial-intelligence, machine-learning
UCSC Genome Browser source. "beta" is released version / "master" is testing.
GitHub repository with 270 stars and 103 forks.
Trending score: 0.05; stars gained: +0; forks gained: +0.
Language: C
Topics: bioinformatics, computational-biology, data-visualisation, genomics-visualization
A self-hosted platform for orchestrating bioinformatics pipelines, managing experimental metadata, and running reproducible compute workloads.
GitHub repository with 5 stars and 0 forks.
Trending score: 0.05; stars gained: +0; forks gained: +0.
Language: Python
Topics: bioinformatics, computational-biology, data-provenance, gcp, genomics, kubernetes
🔍 Enhance code searches with ast-grep, finding patterns in your code structure for improved error handling and analysis.
GitHub repository with 5 stars and 0 forks.
Trending score: 0.05; stars gained: +0; forks gained: +0.
Topics: ai-scientist, anthropic, anthropic-claude, anthropic-skills, awesome, bioinformatics
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
GitHub repository with 1,051 stars and 369 forks.
Trending score: 0.05; stars gained: +0; forks gained: +0.
Language: C++
Topics: science, simulation, biological-simulations, biomechanics, engineering, computational-science