UCD-SERG/serocalculator

Estimating Infection Rates from Serological Data

GitHub repository with 7 stars and 3 forks.

Language: R

Topics: epidemiology, incidence-estimation, r, r-package, rstats, seroepidemiology

Open provider repository

Latest metric snapshot

2026-06-05: 7 stars and 3 forks.

Similar repositories

  1. 1. epinowcast/epinowcast

    A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation, delay estimation, and forecasting from data subject to reporting delays, right-truncation, missing data, and incomplete ascertainment

    GitHub repository with 65 stars and 21 forks.

    Trending score: 0.05.

    Language: R

    Topics: nowcasting, stan, cmdstanr, epidemiology, outbreak-analysis, pandemic-preparedness

Trending in R

  1. 1. mengxu98/scop

    An R package for single-cell and spatial omics analysis, integration, interpretation, and visualization.

    GitHub repository with 254 stars and 31 forks.

    Trending score: 0.57; stars gained: +2; forks gained: +0.

    Language: R

  2. 2. prisma-flowdiagram/PRISMA2020

    Produce PRISMA-2020 compliant flow diagrams

    GitHub repository with 276 stars and 116 forks.

    Trending score: 0.49; stars gained: +2; forks gained: +0.

    Language: R

    Topics: prisma, review, systematic, visualization, meta-analysis, reporting

  3. 3. r-lib/cli

    Tools for making beautiful & useful command line interfaces

    GitHub repository with 711 stars and 85 forks.

    Trending score: 0.37; stars gained: +1; forks gained: +0.

    Language: R

    Topics: r, cli

  4. 4. SequoiApp/Rsequoia2

    GitHub repository with 10 stars and 0 forks.

    Trending score: 0.33; stars gained: +1; forks gained: -1.

    Language: R

  5. 5. Hinna0818/UKBAnalytica_v2

    📊 A Scalable Phenotyping and Statistical Pipeline for UK Biobank RAP Data Analysis

    GitHub repository with 33 stars and 4 forks.

    Trending score: 0.33; stars gained: +1; forks gained: +0.

    Language: R

  6. 6. riazarbi/sp500-scraper

    Constituent history of the S&P 500 from various data sources

    GitHub repository with 35 stars and 13 forks.

    Trending score: 0.33; stars gained: +1; forks gained: +1.

    Language: R

    Topics: backtesting, equity-data, equity-research, sp500, sp500-data-analysis

Trending topic: epidemiology

  1. 1. d-morrison/rme

    Regression Models for Epidemiology

    GitHub repository with 9 stars and 15 forks.

    Trending score: 0.17; stars gained: +0; forks gained: +0.

    Language: Lua

    Topics: epidemiology, glms, regression, survival-analysis, quarto, quarto-book

  2. 2. robert-koch-institut/COVID-19-Hospitalisierungen_in_Deutschland

    Im Datensatz "COVID-19-Hospitalisierungen in Deutschland" des Robert Koch-Instituts werden tÀglich aktualisierte Informationen zu Hospitalisierungen im Zusammenhang mit COVID-19 basierend auf den Meldungen nach dem Infektionsschutzgesetz (IfSG) bereitgestellt. Neben tagesaktuellen Fallzahlen und Inzidenzen auf Bundes- und LÀnderebene enthÀlt der...

    GitHub repository with 73 stars and 11 forks.

    Trending score: 0.04; stars gained: +0; forks gained: +0.

    Topics: krankenhauseinweisung, covid-19, sars-cov-2, hospitalization, infections, deutschland

  3. 3. robert-koch-institut/SARS-CoV-2-Sequenzdaten_aus_Deutschland

    Im Datensatz "SARS-CoV-2-Sequenzdaten aus Deutschland" umfasst vollstĂ€ndige Virusgenomsequenzen sowie zugehörige Metadaten aus bundesweit erhobenen Proben. Die Proben werden in Zusammenarbeit vom IMSSC2-Labornetzwerk, dem Nationalen Referenzzentrum fĂŒr Coronaviren an der CharitĂ© sowie dem RKI sequenziert und bioinformatisch analysiert. Der Daten...

    GitHub repository with 69 stars and 7 forks.

    Trending score: 0.04; stars gained: +0; forks gained: +0.

    Topics: covid-19, sars-cov-2, genom, basensequenz, deutschland, genome

  4. 4. EMOD-Hub/EMOD

    Source files for building the IDM EMOD disease transmission model.

    GitHub repository with 106 stars and 52 forks.

    Trending score: 0.00; stars gained: +0; forks gained: +0.

    Language: C

    Topics: epidemiology, hiv, idm, malaria, modeling, stochastic

  5. 5. epinowcast/epinowcast

    A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation, delay estimation, and forecasting from data subject to reporting delays, right-truncation, missing data, and incomplete ascertainment

    GitHub repository with 65 stars and 21 forks.

    Trending score: 0.05.

    Language: R

    Topics: nowcasting, stan, cmdstanr, epidemiology, outbreak-analysis, pandemic-preparedness