A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.
GitHub repository with 20 stars and 1 forks.
Language: Python
Topics: bioinformatics, bruker, data-conversion, ecuypers-group, imzml, m4i-cuypers-group, mass-spectrometry, mass-spectrometry-imaging, msi, omics-data-integration
2026-06-05: 20 stars and 1 forks.
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.
GitHub repository with 923 stars and 191 forks.
Trending score: 1.10; stars gained: +10; forks gained: +2.
Language: Python
Topics: ai-agents, bioinformatics, equity, genomics, local-first, openclaw
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
GitHub repository with 34 stars and 10 forks.
Trending score: 0.59; stars gained: +3; forks gained: +0.
Language: Python
Topics: ai-agent, awesome, awesome-list, bioinformatics, biomedical, genomics
Drop-in scientific plotting skill for Claude Code, Codex, Cursor, and other coding agents.
GitHub repository with 126 stars and 1 forks.
Trending score: 0.35; stars gained: +1; forks gained: +0.
Language: Python
Topics: agent-tools, ai-agent, bioinformatics, cell-style, data-visualization, ggplot2
rapids-singlecell: GPU-accelerated framework for scRNA analysis
GitHub repository with 374 stars and 46 forks.
Trending score: 0.32; stars gained: +1; forks gained: +0.
Language: Python
Topics: anndata, bioinformatics, gpu, scverse, single-cell
Cloud-native genomic dataframes and batch computing
GitHub repository with 1,064 stars and 266 forks.
Trending score: 0.32; stars gained: +1; forks gained: +0.
Language: Python
Topics: genetics, vcf, genomics, gwas, bioinformatics, python
Annotated data.
GitHub repository with 748 stars and 196 forks.
Trending score: 0.28; stars gained: +0; forks gained: +0.
Language: Python
Topics: scanpy, data-science, transcriptomics, bioinformatics, machine-learning, scverse
The agent that grows with you
GitHub repository with 182,637 stars and 31,313 forks.
Trending score: 5.95; stars gained: +1,867; forks gained: +361.
Language: Python
Topics: ai, ai-agent, ai-agents, anthropic, chatgpt, claude
Academic Research Skills for Claude Code: research → write → review → revise → finalize
GitHub repository with 27,643 stars and 2,276 forks.
Trending score: 5.52; stars gained: +1,079; forks gained: +89.
Language: Python
Topics: academic-pipeline, academic-writing, ai-research, claude, claude-code, literature-review
Learn it. Build it. Ship it for others.
GitHub repository with 28,711 stars and 4,695 forks.
Trending score: 5.32; stars gained: +1,261; forks gained: +238.
Language: Python
Topics: agents, ai, ai-agents, ai-engineering, computer-vision, course
An opinionated list of Python frameworks, libraries, tools, and resources
GitHub repository with 301,435 stars and 28,046 forks.
Trending score: 4.60; stars gained: +518; forks gained: +24.
Language: Python
Topics: awesome, collections, python, python-frameworks, python-libraries, python-tools
Use claude-code for free in the terminal, VSCode extension or discord like OpenClaw (voice supported)
GitHub repository with 32,540 stars and 4,942 forks.
Trending score: 4.56; stars gained: +467; forks gained: +82.
Language: Python
The agent engineering platform.
GitHub repository with 138,587 stars and 22,961 forks.
Trending score: 4.53; stars gained: +171; forks gained: +31.
Language: Python
Topics: agents, ai, ai-agents, anthropic, chatgpt, deepagents
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.
GitHub repository with 923 stars and 191 forks.
Trending score: 1.10; stars gained: +10; forks gained: +2.
Language: Python
Topics: ai-agents, bioinformatics, equity, genomics, local-first, openclaw
Conda recipes for the bioconda channel.
GitHub repository with 1,831 stars and 3,955 forks.
Trending score: 0.97; stars gained: +4; forks gained: +1.
Language: Shell
Topics: bioinformatics, conda, hacktoberfest, package-management
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
GitHub repository with 34 stars and 10 forks.
Trending score: 0.59; stars gained: +3; forks gained: +0.
Language: Python
Topics: ai-agent, awesome, awesome-list, bioinformatics, biomedical, genomics
An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.
GitHub repository with 57 stars and 7 forks.
Trending score: 0.40; stars gained: +1; forks gained: +0.
Language: MDX
Topics: bioinformatics, data-sharing, public-health, sequencing-data, virus-evolution, virus-sequences
Drop-in scientific plotting skill for Claude Code, Codex, Cursor, and other coding agents.
GitHub repository with 126 stars and 1 forks.
Trending score: 0.35; stars gained: +1; forks gained: +0.
Language: Python
Topics: agent-tools, ai-agent, bioinformatics, cell-style, data-visualization, ggplot2
Source code for JBrowse 2, a modern React-based genome browser
GitHub repository with 285 stars and 84 forks.
Trending score: 0.33; stars gained: +0; forks gained: +0.
Language: TypeScript
Topics: jbrowse, genomics, bioinformatics, visualization