Juke34/AliNe

Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease

GitHub repository with 21 stars and 3 forks.

Language: Nextflow

Topics: bbmap, bowtie, bowtie2, bwa, bwamem2, dragmap, graphmap2, hisat2, kallisto, last

Open provider repository

Latest metric snapshot

2026-06-05: 21 stars and 3 forks.

Trending in Nextflow

  1. 1. nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    GitHub repository with 416 stars and 1,060 forks.

    Trending score: 0.40; stars gained: +0; forks gained: +3.

    Language: Nextflow

    Topics: dsl2, modules, nextflow, nf-core, nf-test, pipelines

  2. 2. nf-core/rnavar

    gatk4 RNA variant calling pipeline

    GitHub repository with 61 stars and 47 forks.

    Trending score: 0.32; stars gained: +1; forks gained: +0.

    Language: Nextflow

    Topics: gatk4, variant-calling, rnaseq, rna, worflow, pipeline

  3. 3. genomic-medicine-sweden/nallo

    An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.

    GitHub repository with 67 stars and 23 forks.

    Trending score: 0.05; stars gained: +0; forks gained: +0.

    Language: Nextflow

    Topics: gms, long-read-sequencing, nanopore, pacbio, variant-calling

Trending topic: bbmap

  1. 1. bbushnell/BBTools

    BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.

    GitHub repository with 78 stars and 5 forks.

    Trending score: 0.33; stars gained: +1; forks gained: +0.

    Language: Java

    Topics: alignment, assembly, bbmap, bioinformatics, fastq, genomics