CEGRcode/scriptmanager

genomics toolbox that supports both graphical and command-line execution

GitHub repository with 15 stars and 6 forks.

Language: Java

Topics: bioinformatics, ngs-analysis

Open provider repository

Latest metric snapshot

2026-06-05: 15 stars and 6 forks.

Similar repositories

  1. 1. broadinstitute/gatk

    Official code repository for GATK versions 4 and up

    GitHub repository with 1,961 stars and 627 forks.

    Trending score: 0.32; stars gained: +1; forks gained: +0.

    Language: Java

    Topics: bioinformatics, dna, gatk, genome, genomics, ngs

  2. 2. VerisimilitudeX/DNAnalyzer

    Precision genomics for everyone, everywhere. Powered by private AI.

    GitHub repository with 179 stars and 76 forks.

    Trending score: 0.24; stars gained: +0; forks gained: +0.

    Language: Java

    Topics: bioinformatics, dna-sequencing, regulatory-elements, genomics, artificial-intelligence, machine-learning

Trending in Java

  1. 1. fish2018/webhtv

    WebHomeTV 基于FongMi二次开发,增强了 WebHome 自定义首页、App Native SDK、网盘链接检测 和 Nostr推荐首页。 这个项目的核心目标是让 CSP 站点首页可以变成一个真正可开发的网页应用:开发者可以用 HTML/CSS/JavaScript 定制首页,再通过 App 暴露的 Native 能力完成搜索、播放、跨域请求、资源代理、最近观看、网盘检测和状态同步。

    GitHub repository with 385 stars and 108 forks.

    Trending score: 3.29; stars gained: +83; forks gained: +16.

    Language: Java

  2. 2. juanjuandog/FinSight-AI

    AI equity research agent with resilient workflows, Redis Lua single-flight, pgvector RAG, versioned reports, evidence tracing, and RAG evaluation.

    GitHub repository with 1,003 stars and 58 forks.

    Trending score: 3.24; stars gained: +77; forks gained: +1.

    Language: Java

    Topics: ai-agent, financial-research, llm-evaluation, pgvector, postgresql, rabbitmq

  3. 3. apache/kafka

    Apache Kafka - A distributed event streaming platform

    GitHub repository with 32,714 stars and 15,251 forks.

    Trending score: 2.36; stars gained: +10; forks gained: +7.

    Language: Java

    Topics: java, kafka, scala, streaming

  4. 4. spring-projects/spring-ai

    An Application Framework for AI Engineering

    GitHub repository with 8,869 stars and 2,616 forks.

    Trending score: 2.31; stars gained: +22; forks gained: +5.

    Language: Java

    Topics: artificial-intelligence, hacktoberfest, java, spring-ai

  5. 5. JetBrains/intellij-community

    IntelliJ IDEA & IntelliJ Platform

    GitHub repository with 20,185 stars and 5,925 forks.

    Trending score: 2.29; stars gained: +16; forks gained: +4.

    Language: Java

    Topics: code-editor, ide, intellij, intellij-community, intellij-platform

  6. 6. apache/beam

    Apache Beam is a unified programming model for Batch and Streaming data processing.

    GitHub repository with 8,605 stars and 4,576 forks.

    Trending score: 2.18; stars gained: +5; forks gained: +4.

    Language: Java

    Topics: batch, beam, big-data, golang, java, python

Trending topic: bioinformatics

  1. 1. ClawBio/ClawBio

    🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.

    GitHub repository with 923 stars and 191 forks.

    Trending score: 1.10; stars gained: +10; forks gained: +2.

    Language: Python

    Topics: ai-agents, bioinformatics, equity, genomics, local-first, openclaw

  2. 2. bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    GitHub repository with 1,831 stars and 3,956 forks.

    Trending score: 0.97; stars gained: +4; forks gained: +1.

    Language: Shell

    Topics: bioinformatics, conda, hacktoberfest, package-management

  3. 3. BioTender-max/awesome-bio-agent-skills

    A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.

    GitHub repository with 34 stars and 10 forks.

    Trending score: 0.59; stars gained: +3; forks gained: +0.

    Language: Python

    Topics: ai-agent, awesome, awesome-list, bioinformatics, biomedical, genomics

  4. 4. pathoplexus/pathoplexus

    An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.

    GitHub repository with 57 stars and 7 forks.

    Trending score: 0.40; stars gained: +1; forks gained: +0.

    Language: MDX

    Topics: bioinformatics, data-sharing, public-health, sequencing-data, virus-evolution, virus-sequences

  5. 5. Dsadd4/AgentFigureGallery

    Drop-in scientific plotting skill for Claude Code, Codex, Cursor, and other coding agents.

    GitHub repository with 126 stars and 1 forks.

    Trending score: 0.35; stars gained: +1; forks gained: +0.

    Language: Python

    Topics: agent-tools, ai-agent, bioinformatics, cell-style, data-visualization, ggplot2

  6. 6. GMOD/jbrowse-components

    Source code for JBrowse 2, a modern React-based genome browser

    GitHub repository with 285 stars and 84 forks.

    Trending score: 0.33; stars gained: +0; forks gained: +0.

    Language: TypeScript

    Topics: jbrowse, genomics, bioinformatics, visualization